endo
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- I know those sound complex, and there are dozens of other exciting analysis methods
- This is all really just to say that phylogenetic tools such as Concaterpillar and PhyloSort are paving the way for researchers to systematically address centuries-old questions and gene transfer and endosymbiosis!
- So what you're saying is that the eukaryote is really just... an IDEA?!
- This program is a likelihood ratio-based method designed to test for congruence among loci using hierarchical clustering. It performs pairwise likelihood ratio comparisons for all loci in an iterative fashion, combining the proteins with the lowest likelihood ratio at each step and considering them as a single locus for subsequent steps. In this way, the program builds data sets of proteins based on the similarity of their phylogenetic signal until all loci have been considered. The resulting data sets can then be analyzed independently to consider the various competing phylogenetic signals in the data, rather than settling for a tree based on a mix of conflicting information
- Concaterpillar
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